PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00113.1_g00022.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 349aa    MW: 40076.8 Da    PI: 6.1064
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00113.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.63e-50101521129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                              lppGfrFhP+deelv++yL++k+++k+           +          + e+d++ +ePw+Lp  +k + kewyfFs rd+kyat
  Rsa1.0_00113.1_g00022.1  10 LPPGFRFHPSDEELVCHYLCNKIRAKSdhgdvedD---DvdealkgasDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYAT 92 
                              79***********************9976655441...1556666764699*************87788999************** PP

                      NAM  71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              g r+nrat sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  Rsa1.0_00113.1_g00022.1  93 GYRTNRATVSGYWKATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                              ************************967888***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-578170IPR003441NAC domain
PROSITE profilePS5100553.87710170IPR003441NAC domain
PfamPF023651.1E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDHGD VEDDDVDEAL KGASDLVEID  60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT VSGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDLSLQDSN  180
YDNDHQTQRL EVNDAPDLNY APNYNNQLQP LLSSPPSTTI DPPHHHDQWE QLMKQPSRII  240
DHPCHHHCQH QSTCGWEQMM IGSMSSSSSH GPDHESLHNL LYADKNNSVN IAADHHDQNY  300
EKILLPSYIA SLDHDKTCMG SSFDIGMISD LHMECAGLSF ETENLLAFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B7e-451017017165NAC domain-containing protein 19
4dul_A7e-451017017165NAC domain-containing protein 19
1ut7_B7e-451017017165NO APICAL MERISTEM PROTEIN
1ut7_A7e-451017017165NO APICAL MERISTEM PROTEIN
1ut4_B7e-451017017165NO APICAL MERISTEM PROTEIN
1ut4_A7e-451017017165NO APICAL MERISTEM PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382740.0KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303022.10.0protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A0A7DNN50.0A0A0A7DNN5_BRANA; NAC transcription factor 74-2
STRINGBra024194.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74